Scaffold Ga0334986_0023577

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0023577
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4148
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050332	Metagenome	145	N
F090332	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0023577_1634_1924	F090332	N/A	MPRYEITRSARAIDDDLDIVQNNDICYLLDGRYGRIYAGLSVRYDAAVAPEGWFFLRETIENRVLNKELVASGLVVLGDKMIVGRRTAQLARVKNG
Ga0334986_0023577_2315_2734	F050332	GGAG	MAEFARGPQVSYDVWLSDKKEPKEKEFKTGTKAFEFFASRATDAYTQWRSADKETRGAEPTDKYVYLTLTVFDKKTQEHLYKIYYKVAESKTKNPSEKRPNLHVTGESRNVREYDGKAYEDVTVRDASPLIWTPAEPRE