Scaffold Ga0334986_0022569

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0022569
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4263
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027496	Metagenome / Metatranscriptome	194	N
F031464	Metagenome / Metatranscriptome	182	N
F039106	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0022569_1932_2144	F039106	AGGA	MIQLYFNDKPCEIVSRDSTDGTVCIRYAANHPNWPFPNYTWVNPSVLSKLRQSKHAKRLEALQGVEDALM
Ga0334986_0022569_2211_2384	F027496	GAGG	MTKEMLDELLYLIELQIKANIAIALGHADAADKEAEREHVQYYRLVSLIDSMRDDLK
Ga0334986_0022569_3398_3679	F031464	AGGA	MRKRIQPRKRKVNPYVAYLENHGRHATLEDLLEAFPNKTSKQIRDSMSKLVDNYTVDRDIRKDDHQYLISYSLGGYNTKDNTGICWHNPFNLR