Scaffold Ga0334986_0019939

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0019939
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4593
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y
F015702	Metagenome	252	Y
F040479	Metagenome	161	Y
F053900	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0019939_1_342	F053900	N/A	AATLGQLLPFVIASVIDGTVLEQAQEMIRDGQPKGSSSPAEGGNLLANLIDIKKGFLKLDQEDQALLRMRHHESFTLQQIAQVLECAISTADRRCAQSLRRLQDNLGGVSPWQ
Ga0334986_0019939_1255_1539	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPEIYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGIHTRANAVPEVAGRTDYEGADESYYGGEA
Ga0334986_0019939_1853_2023	F015702	GAGG	MIREVELEYTVYNLVRLSRKVWGENADEYLAGRLESVITYNQMKVLVDSLKEEANE
Ga0334986_0019939_722_895	F013279	AGGCGG	MQYDYRCPDCNSVLTIERSIHEEPREPSCFDCHIPMVRKWDTPSITFKGKGFYSNGG
Ga0334986_0019939_962_1171	F040479	GGA	VSPGSTTLLAQETLRANQLAQLSELLNCLENVVENLNYKSFTLYDTLNTVIEEVSAVLSGTPTESAGTE