Scaffold Ga0334986_0016605

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0016605
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5102
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026864	Metagenome	196	Y
F046686	Metagenome	151	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0016605_1635_1892	F068766	AGGAGG	MTTEDNVVGFHPKNKLVNFYEVTTKEGNAVWGGEDPHSAYQWLRQSPMDSRLLVSCWEAGEEDARLIIEPIDITKIVHAVLAGTQ
Ga0334986_0016605_2211_2498	F026864	N/A	LRIGWRRRLEKEEKMTEQDKTAQFVFTVVVIPDNKRYEIELWDFAGAKPDLIAAGEGTNWRTALGEALAKIELPTDKVEKTVSDLVKERAEDEGV
Ga0334986_0016605_976_1173	F046686	GGA	VRAGLTTSQITNEARLTELLNSLESVVASLNYKSFTVYDTLVIATENLRVALSNIATDEDGTDTL