Scaffold Ga0334986_0015653

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0015653
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5284
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034147	Metagenome / Metatranscriptome	175	Y
F059884	Metagenome / Metatranscriptome	133	Y
F088879	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0015653_2518_2835	F059884	N/A	MLLVGRTKVPYEQLFCLSRKELKALVKGHEIDQKDMIEAMRVQAIIGLQPHLKKGANLDPTKLWPLPWDNVVKPLESTPQDFAKAKKLLEIASKLERNGKSKNRG
Ga0334986_0015653_2877_3203	F034147	N/A	MAKYHSAPFKEGEIFFYPNLGALANFEDFTGLGIASAFDGQAIPKIDLIYALLHECHKVACLRKSTNPVSLDELKVWIEGKDVMKLFNDVLADLLLELGIGESQEKKT
Ga0334986_0015653_3670_4119	F088879	N/A	MRDISTDIRIAVINAITPLTLSGVTIPIYDTELPPSVNPANYQGSAAFVLITDQNEAETTNNDCSIRQNATFQINIVTKFAQGNGGKLLSENISNAIQLKMNLDDLVLPGDLQAVNIRKNFSRVQIEQGSSQIAYQKILSYTLDIFQVS