Scaffold Ga0334986_0014705

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0014705
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5479
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019993	Metagenome / Metatranscriptome	226	Y
F025232	Metagenome / Metatranscriptome	202	Y
F095365	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0014705_1287_1448	F095365	N/A	MEKYCQIAYEAYRQDVTTNYMSYDQFKKALCKPAIPTWVLLAGGAAVGYSLKK
Ga0334986_0014705_2918_3382	F019993	N/A	MKQEVKLILVAGLGYLGFKAYQIYTAIKQLSYAPTGIRFSINKSRGAIGGTLFVDIINPTPANIRIDGFTGTVTTTDGTMIGDYRGEALTLRPGVNNVRISWGSRSSLTLVSLAIGIASGKFPVLSFNTVYNIKGLPIPTSFKMNTAAYKPTFI
Ga0334986_0014705_4437_4664	F025232	N/A	MENVNEKILEDYRLVVMRLDLMKAEVDEVNRANWKLRKAFCELLEVYQDTLDRFDSIKDRGEVEYHWCEKAGILD