Scaffold Ga0334986_0013656

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0013656
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5727
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y
F074372	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0013656_1482_1724	F029017	GGAGG	MTEIGLLTWHIVQLVLWAGPFGVAAFLAAIGGAAFYAGFSMRPKRTDKPMGNVKMDHIKYDILPDGTLGPGDPRGLEDPE
Ga0334986_0013656_1843_2220	F018127	GGAG	MAKKENNWIPWLVVGGFAFYVFSQQPKEGGDPSKPAGVTAVVRSTIPSIRAAYKQAFLDAAAKIEAGEIANQEQWTKFIEENAGAKRTEAMDKVYSAIDELKLPVTFAGKEKELAEINRKIAGAW
Ga0334986_0013656_5086_5238	F074372	AGG	MTDDEKTRNLQDKVYWLEMRVKLLQARNKELRKWITKLTNKTHEARRAGK