Scaffold Ga0334986_0010292

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0010292
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6731
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0010292_2097_2519	F003748	N/A	MFTVNRKDAGSNYINAEGEYIVTVTKVEESLDAKGREVCKVTFVTDDGSSISDRFINQENVWFRVNQLVAATNHNVPDGTEVDFLGKKGSYAAFLRSMIGLELAIVVRAEEYEVNGEKKKTYRVKNMKASAQLLPEEKPF
Ga0334986_0010292_5875_6138	F001964	GGAG	MSQKSYAPTRYKVQINGAIGWSDLKQRTVIYETVIFATRKEAEQAAKDLNPGEYTQGRIRVVPKDLPEDYDIYPVGERDEEKPKSSI
Ga0334986_0010292_6135_6365	F002227	AGG	MKLTIQSKQNAQTIIDLFNAVINGEVQEHGAQPLSIYDDDKHICSIVAANGQQILELVIEREEGDMIVQQGEPETL