NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0009998

Scaffold Ga0334986_0009998


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0009998 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6840
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009945Metagenome310Y
F011473Metagenome290Y
F016922Metagenome243Y
F026794Metagenome196Y
F037053Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0009998_1228_1515F009945GAGMSTALATFKRAHGVATHRLAGAGHRYAWMAFFATITMKDGTRRAFTELAHEYSMATLAMRDKVTEGADELSACKILAERNGIPWPADEPKRKAKP
Ga0334986_0009998_1906_2247F026794GGAMPDFHNSISDRDFNVTASQLRHAENDAREATRGEVTFDELDRRYADPISREELTALLPFIIAFTERETVWCYELMERHGRPMHTWTPITEWDGHFRHECLSLTYRTDNPFATE
Ga0334986_0009998_3184_3378F016922N/AMSKPIRINSRAIQCVADSEGATEYAIRYGGRDFLVTAHSRLEADIAVEYYRAPEADESQPDLLK
Ga0334986_0009998_3933_4253F011473N/AMNWKKYITDPLTNRPRRGAISRIAALLGTHYGCVRRMFDGVWTPTDDEASRLRCIVADKVNLAPKKRSDAGKKRGEYRKRAVAKSCAVPPQLKGLRSAKNTARKLN
Ga0334986_0009998_657_872F037053GGAGGMNTPTVDDIIADLEARGLGWSLENTGRLIEARVWDWPTVIGRYRPATVEPLAKMLAAACYDVSWTKYPVKA

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