NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0007099

Scaffold Ga0334986_0007099


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0007099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8340
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (35.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006785Metagenome / Metatranscriptome364Y
F011387Metagenome / Metatranscriptome291Y
F100424Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0007099_1540_1962F006785GGAGGMSGGDWNTTRERKQLALDARELEREQLRLEKRQLRDLRWAVERSSLAASDWADLLALQAAHGKEGPLQLWRELVPYWRACQRCNGGADIPPGLFPQATGIFPRTDQPAKAPANRTRSSKGAARKVRSDAGISKPRKVRAP
Ga0334986_0007099_1959_2186F100424AGGMPPNYGNRPLGPLQRNWLNFLRRNPGPHYVAMPQRDQRIADSLQARGLITLAPAPVADPNGLPVYTLEAVEAPQP
Ga0334986_0007099_6163_6507F011387N/AMASVAITAVDRYTSLVEYTGATMDALNEYFEVTAHSSSYTFAATVTSSANFKLALECSCNGTWFTIDTSKTISNAGEYVYFYTGSPAAKIRMRISQITSGTPNLVPHIAVAYHG
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