Scaffold Ga0334986_0006270

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0006270
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8915
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (62.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008077	Metagenome / Metatranscriptome	339	Y
F008238	Metagenome / Metatranscriptome	336	Y
F008617	Metagenome / Metatranscriptome	330	Y
F018140	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0006270_1069_1395	F008238	N/A	MTFKLNLSIFKSTKPESKVDFSGMMNVKVEELDAFCAFVLSQTPDQYGSVQVPISGWKKTSQKGLAYVSAVAQPPRDWVPPVTAQSAAQSLATATDGVVSEFTEADLF
Ga0334986_0006270_1373_1597	F008077	N/A	MNFGQWMAVELSAEQQFEIEKQARALLQSKDAGALAAALLKQTCYQQQLLQQAVNEIARLECELMGFPRTDRPR
Ga0334986_0006270_2134_2265	F008617	AGG	MINHINNAICLLIAAAVFAMIGIESGAHHQPTHSGTQQVVRHD
Ga0334986_0006270_8525_8758	F018140	GAG	MTEDTKTVSGVFAASLPAALAAGMVAIGALLISMQVQSARIEATIVQMAKSVDELKTDARAEMADLDKRVRALELRD