Scaffold Ga0334986_0005101

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0005101
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10061
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F005388	Metagenome / Metatranscriptome	402	N
F010673	Metagenome	300	Y
F085601	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0005101_2264_3502	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPIFTNQGMTIIFRRCTGSLTQIICS
Ga0334986_0005101_4397_4849	F000922	AGG	MKGKAWEKAKALYLAGKSWKAISDETGIVQSTLQSKASRDDWTKFRKGMRDIVSTKETQSLESLSALVRSKLAADAASTLERVDSYDLDGLKDEATRETILNSVAKRSALVFGWSEAGEATSVSINLLGSMPDRFAEVVVHGDSAGATVR
Ga0334986_0005101_6972_7175	F085601	N/A	MKYYVMQTSLSSGSKPQLVQWSKTESDAVAYARQQLDLWREVGVTNPPRYEVHYSGLRGSALWSSLD
Ga0334986_0005101_7611_8210	F010673	N/A	MNPKLLPIIERIIARETILLSFHADNLPQAALAYVRQHYRMDSFLSDEDQDLIETLAPFADDIADSFRAGTGGDDSVYHLFQDGSLWLKTNAYSSVWADARDFAVEILLPRMELSRMDADLLRAIDMEDAVESVRADFYSSFAHILNRDCGIPYCDAREHWNAYARQLSDSACEAVVLGGSESGRKEGERFAESFTVKA
Ga0334986_0005101_9730_9975	F001964	GGAGG	MSRNLFAKPLYKVQLSGAIGWSDMKEKVVSYQTVEFASRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERIQS