NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0004949

Scaffold Ga0334986_0004949


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0004949 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10224
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032962Metagenome / Metatranscriptome178Y
F032998Metagenome178N
F056345Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0004949_5548_5970F032962AGGAGMAALTVADTGLGATISGTSLITTQVVSIGEMTISVDSLDISSLDTTGFEALRPSDLRKNPEVDVVFNWLGAAIPFAATMIPTSEPYAGTSVTITFPGAGSLQGTAFVKEVKTPKLGKGEVMKGSYKLQFDGATDITFTPA
Ga0334986_0004949_5984_6301F056345AGGAMVFELNRQRGISLATGIERDLNQCQIRVGGKLVGYLPLGETPQIQAIFEFPHDALTAEEIASLEKQLEAIQGYPAKVQRPEQVSRSFVEAAIKAVAQAKDEEDDE
Ga0334986_0004949_8913_9785F032998GGGGGMANELVGAELRKGSGFARKGQGFQLILGETWNYRVKTDQVTSNRQSILYDTPGLPRAGLLYGPLGLICDSVDCDREEKHALFWNVTARFQTGTEEQKQNSENNPDPATWIPIFKIDSFVTKEKVLAKDRSTPAKYPVNSAGTPFDQPLTDTSSFCQFSFVQFDDPGLKLTDFLGRNDIVNKTAFTALGQTFAARTLLLEVQEAELGSYAGYAAWRAKYKVTYDPDNHDEKRPDIGPFYKSGGQTLRYMDSTNTFPMVGPLNGSGAKATDPAELVFRCKKEVEFSTIIRTS

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