Scaffold Ga0334986_0004338

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0004338
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10982
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F003964	Metagenome	459	Y
F010535	Metagenome / Metatranscriptome	302	Y
F014971	Metagenome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0004338_2099_2497	F002421	AGGAG	MANCTICKEQIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTRPQQNEVDAAIVQVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYANRGGAHDHAQRLSVWAGI
Ga0334986_0004338_3288_3464	F010535	AGGA	MTEPQIVDYSVYIGVMDNGQEILVQIFTNPDSGKYLQGQIAFRSHASSWGVPIPLEKR
Ga0334986_0004338_3493_4035	F001872	N/A	VAIAKAKAGVPNARDYIGNADGASPAVRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKNPKAGRKEALLFIDKLVANANDLGLQCILDYFPEPQGRAWRCDRQAWQKYEKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKDIPIP
Ga0334986_0004338_4656_4793	F014971	AGGA	MTYEEAVAMYPQDEVFIQVDDETRTMTDEEYAAFINQQVNAQPAP
Ga0334986_0004338_7931_8443	F003964	GGAG	VAGVSAKIEVVGLKDALKTLNKIDKSLRREITKDYKRIVKPVIDDANALVPTGVPLSGMSRNWKTRSGFQMLPWVPSMKQKIAAKINTRAVKEYQGNTTNVGTFSIQWKGATGTMFDMSMAGSLGRALTARYGNRSRVMWKAYEQRQSDVMSEMEQLVKRVMDEANRETA
Ga0334986_0004338_9732_10364	F001326	N/A	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVASVDATFNGTYTVRALPQYLFLGVDTQGDLLYDYQIPIADQVLYAKTASDVERVAASGTVTYEPVCTWVTAAQVMTYLGITIINPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIESTYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA