Scaffold Ga0334986_0004144

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0004144
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11240
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (32.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008128	Metagenome / Metatranscriptome	338	Y
F020160	Metagenome	225	Y
F022401	Metagenome	214	Y
F033011	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0004144_10648_10806	F020160	AGG	MECRKRLAWTIACERAVVTKEDAVTIYNRLMDEFNGMDKRNKYKQAESNKSQ
Ga0334986_0004144_604_966	F022401	N/A	MGSTQEPVDTIKQWQDWYRSHRIIAEINTPMTTKDTKENMHDTSNAVETLSDTNPKAMWIEKAREHFADTLAEYQYELSGKDFYKAFYQAATEAMGYAEKEYQRTKELVDMLRYHHLSQD
Ga0334986_0004144_75_269	F008128	N/A	MEPVYVPKLTVSFAVDLEVEYNSFGGKTTDEIAEAIQDDLDDLLFELGHVTGVCTSCTSIEFND
Ga0334986_0004144_8909_9070	F033011	N/A	MTANLTRFYFDFDDECRTGCFVNLAYKDVETIEADEYERELQSQDVPYTRVDL