Scaffold Ga0334986_0003763

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0003763
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11922
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002370	Metagenome / Metatranscriptome	566	Y
F009203	Metagenome / Metatranscriptome	321	Y
F009260	Metagenome / Metatranscriptome	320	Y
F093774	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0003763_11471_11638	F002370	AGGAG	MMDAKKAVHKHEKAMHPGKPLTKMKAGGKTNADMLKYGRNMAKVMNQRSPGRKGA
Ga0334986_0003763_11640_11840	F009260	AGGAG	MATYKSPKKVPSVVVGEEPAKTTMRKANVSVANTRSQDYPPMKTSGIKIRGTGCATKGLMARGPMA
Ga0334986_0003763_7587_7757	F093774	GGA	MQITKEFLESEIVKMEQQRNHAHEVAVASQAAIDVLQAMIARLELPEPEPENDDAI
Ga0334986_0003763_8490_8696	F009203	GGA	MSENTDTVKNVLDVVAIFSTIGAFLNMLTPLFGLIGAIVGAMRIYEMATGKDFYTLFRRKKADDAKQE