Scaffold Ga0334986_0003054

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0003054
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13445
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007518	Metagenome	349	Y
F039525	Metagenome	163	Y
F082346	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0003054_10770_10973	F082346	AGGA	MIRFSKENLLTMLQNKIIDMESIWGFVPDNGTNQIKDKTEFDRVVAYGEYNSLLDVYESIKNGNYFI
Ga0334986_0003054_8269_8502	F007518	GGAG	MTDWTQEEDEAFNDVEKHSNLGKQILRDLGQPYHYDLFVSPSQRNQVLEEVALEFDKMTNFGDTAASFACYVRGMKQ
Ga0334986_0003054_8901_9080	F039525	N/A	MSETIMSDYIKGFDAGVNCVLTEIQRLEKIGPISLDQLIKHLDPQLDQKTAQKPDKGAP