Scaffold Ga0334986_0002719

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0002719
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14300
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009398	Metagenome / Metatranscriptome	318	N
F017471	Metagenome	240	Y
F032255	Metagenome / Metatranscriptome	180	N
F038227	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0002719_11598_12005	F006262	GGA	VITFTVAIKRAYLRSVYSALGGATLLAALTSKVIAAASVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIADYELAVYLLGQDGIAAPTDTQVFNKMMAVVLVAVTSYGGDFSNFRREGAIRTGMT
Ga0334986_0002719_13891_14298	F017471	N/A	LNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRKVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVCLKTLHNTDPWKT
Ga0334986_0002719_1728_2159	F032255	N/A	MFGVNNSDAVFTGLTSIESYDLTHEADTEEVRNSTGEVVGHIGYNERVTLNLNLIPSGSTAAAALAFCSLAPVNGTVRISGAPIIAMMGYGDILNTEDILMGGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTAGAAKVLNA
Ga0334986_0002719_2226_2708	F006107	GGA	MNAAALRAELAVADYLAATDWSASGAGTPTCLTSYSRGLYDDPDEQDAMPNFPRIIVSTNSARPMQRTDLTCEVEIAVELQLSADDTDESAMLTAVQVLDNRILPLFDDSGASALDAPSNDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI
Ga0334986_0002719_2705_3502	F005024	N/A	MTVDSDKFDLAMKQYLLSTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPLGNINRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTANLNGGHGLYGKRMKAAASALMKKSIGSVGYLRSAVVKSIRIYNRGFSQFQSPKWKPLSKPAGYRAPKKTNSALVAMANQYGLPEENVAVHKGTVAHGFQAVPGFNPTAFVSMRTGIADSQYNRVSEIYNTAMQKAMDDETTEMINHMAEALLANGKVLEDNGIAIK
Ga0334986_0002719_3517_3972	F009398	N/A	MTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAMVTDANTPVPGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0334986_0002719_7176_7406	F038227	N/A	MISLGTALNRLFPGQAGGTDLPVLRRDVLQEDDFFVLQEDGIGKIVITFGTFDSLLREDAGFLFREDDGKLQIQSN