Scaffold Ga0334986_0002446

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0002446
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15141
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001807	Metagenome / Metatranscriptome	631	Y
F030408	Metagenome	185	Y
F042290	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0002446_11287_11430	F042290	GGA	MYRGCKYNKEQQAKEDRDWWNLAHRPWLRLTYRNIGYLPYLIGGQIK
Ga0334986_0002446_3473_3694	F030408	N/A	MYIALVADRTGRYTHVWGEAKTWGLFHDQLEDVGCEVIENQTYEWYGCTKEEVAEDCLSVHQLLTHSDFVPHP
Ga0334986_0002446_6436_6693	F001807	AGG	MSVLAIEDTIIDGSNVTVTAVVDEMRLLYRASRFEPEEWAPALCSASFELDEDEQIPTDEDGFCSYLDQLDLHWQLIDTSDCDID