NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0002272

Scaffold Ga0334986_0002272


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0002272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15746
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (13.79%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014956Metagenome / Metatranscriptome258Y
F021732Metagenome / Metatranscriptome217Y
F031407Metagenome / Metatranscriptome182N
F031483Metagenome182N
F034112Metagenome / Metatranscriptome175N
F052398Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0002272_1231_1488F014956N/AMNIQDFVINVTTTVCPSHIVEPDNLKRWWRQRGVGELEKYFVSGNAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRTS
Ga0334986_0002272_14086_14382F031407N/AMTDKEKALIIIDLIEKITQEIIDKPMQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPLVSHAKAEPVPFVPTTTETNGDLLADNIPVVTKKARKR
Ga0334986_0002272_14382_15263F034112AGGAMVIFNIGNKAIKYNYPETAADITLEQYIYFAKFLLPEHPKVELEAIQYMNERDAVYQKILPYAKKLKVITKDAFQIDVVCDLGKILQEQEVKDNVRRFLPPLIDQWNTLDKELTTRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYSKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPQGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSERFTLDLQTSMLERAMENLN
Ga0334986_0002272_1849_2103F021732N/AMSITKYTVKCCLDKKLGHFVHVIFSHGHGLHGDNLPRHTDEGMEIHGWKFEPHDIDLSLYPVINERNLMPLVDWNEMDWVIIKN
Ga0334986_0002272_2576_3310F052398N/AMNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIDVSPEHLLEVTKFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQVEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKT
Ga0334986_0002272_798_1256F031483N/AMNILKGRVKYTAGKVFEGQYGPSINAAITLENGTDIRVYGKPDDEKLKALQKDDIVTIIHDGKSYKVAFDMVTANELPEKVQTPTEGNNVQQAANVVPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF

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