Scaffold Ga0334986_0002272

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0002272
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15746
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031407	Metagenome / Metatranscriptome	182	N
F031483	Metagenome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0002272_1231_1488	F014956	N/A	MNIQDFVINVTTTVCPSHIVEPDNLKRWWRQRGVGELEKYFVSGNAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRTS
Ga0334986_0002272_14086_14382	F031407	N/A	MTDKEKALIIIDLIEKITQEIIDKPMQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPLVSHAKAEPVPFVPTTTETNGDLLADNIPVVTKKARKR
Ga0334986_0002272_14382_15263	F034112	AGGA	MVIFNIGNKAIKYNYPETAADITLEQYIYFAKFLLPEHPKVELEAIQYMNERDAVYQKILPYAKKLKVITKDAFQIDVVCDLGKILQEQEVKDNVRRFLPPLIDQWNTLDKELTTRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYSKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPQGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSERFTLDLQTSMLERAMENLN
Ga0334986_0002272_1849_2103	F021732	N/A	MSITKYTVKCCLDKKLGHFVHVIFSHGHGLHGDNLPRHTDEGMEIHGWKFEPHDIDLSLYPVINERNLMPLVDWNEMDWVIIKN
Ga0334986_0002272_2576_3310	F052398	N/A	MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIDVSPEHLLEVTKFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQVEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKT
Ga0334986_0002272_798_1256	F031483	N/A	MNILKGRVKYTAGKVFEGQYGPSINAAITLENGTDIRVYGKPDDEKLKALQKDDIVTIIHDGKSYKVAFDMVTANELPEKVQTPTEGNNVQQAANVVPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF