Basic Information | |
---|---|
Taxon OID | 3300034012 Open in IMG/M |
Scaffold ID | Ga0334986_0002272 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 15746 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (13.79%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014956 | Metagenome / Metatranscriptome | 258 | Y |
F021732 | Metagenome / Metatranscriptome | 217 | Y |
F031407 | Metagenome / Metatranscriptome | 182 | N |
F031483 | Metagenome | 182 | N |
F034112 | Metagenome / Metatranscriptome | 175 | N |
F052398 | Metagenome | 142 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0334986_0002272_1231_1488 | F014956 | N/A | MNIQDFVINVTTTVCPSHIVEPDNLKRWWRQRGVGELEKYFVSGNAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRTS |
Ga0334986_0002272_14086_14382 | F031407 | N/A | MTDKEKALIIIDLIEKITQEIIDKPMQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPLVSHAKAEPVPFVPTTTETNGDLLADNIPVVTKKARKR |
Ga0334986_0002272_14382_15263 | F034112 | AGGA | MVIFNIGNKAIKYNYPETAADITLEQYIYFAKFLLPEHPKVELEAIQYMNERDAVYQKILPYAKKLKVITKDAFQIDVVCDLGKILQEQEVKDNVRRFLPPLIDQWNTLDKELTTRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYSKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPQGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSERFTLDLQTSMLERAMENLN |
Ga0334986_0002272_1849_2103 | F021732 | N/A | MSITKYTVKCCLDKKLGHFVHVIFSHGHGLHGDNLPRHTDEGMEIHGWKFEPHDIDLSLYPVINERNLMPLVDWNEMDWVIIKN |
Ga0334986_0002272_2576_3310 | F052398 | N/A | MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIDVSPEHLLEVTKFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQVEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKT |
Ga0334986_0002272_798_1256 | F031483 | N/A | MNILKGRVKYTAGKVFEGQYGPSINAAITLENGTDIRVYGKPDDEKLKALQKDDIVTIIHDGKSYKVAFDMVTANELPEKVQTPTEGNNVQQAANVVPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF |
⦗Top⦘ |