Scaffold Ga0334986_0002058

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0002058
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16657
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (58.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028146	Metagenome	192	N
F048934	Metagenome	147	N
F051072	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0002058_10048_10284	F051072	GGAGG	MQNDFNRSNPIKNLTGGGHSAARYTGTHGHRERSHYWVFIPGEGWVTWREIHKQVTASFRDWEMRHILGLRKPKAKTQ
Ga0334986_0002058_11411_11707	F028146	N/A	METTHEIKKAAVIAAAAEQVRSLLETHYDAMRKAAEESFVDDETQAEPKAKASFTIEWDALAMAPTVSVKVGWSVRFKDESEAVVDPLQAKLDIGGAE
Ga0334986_0002058_16226_16657	F048934	GGAGG	VITYTLNRQPVHRLRYDGASEAAKVSCEMFERLLELDTLKHDSAANLVRRLATLADLSPSAFRLVLRAGSGDTGSILASFEQQAVDRGKTRQALHWEWQEDVRRIRMVFPEVAAVLVELRETIKHREDAMSSADGLREAMRQTE