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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0002018 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16838 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (80.77%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006016 | Metagenome | 383 | Y |
| F017452 | Metagenome | 240 | Y |
| F039525 | Metagenome | 163 | Y |
| F042295 | Metagenome | 158 | Y |
| F091924 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0002018_11975_12154 | F039525 | N/A | MSETKMSDYIKGFNAGVDCVLNEIERLEKIAPINLEQLIKHLDPQRDQKSAQKPEKGAS |
| Ga0334986_0002018_13029_13343 | F006016 | N/A | MTTATQIQTEALIATITSDIDALYVLDQQAKALAEQIKSLKDAIANKYGEGEHKGELHSVTVKMVEVSGTVDYKKLCVAYGIQDDVLNTFRKENRADIRVTPTK |
| Ga0334986_0002018_15613_16029 | F042295 | GGA | MALKNFTKFNKTEAVDDSPNTHNCFANGCPMAGGISTGSNWVCAYHHQAEATDWPRVTEALRDSEKIRIAINEVMVIDMISWGSATNGYPPKWQEFAALFDNEPELQPTDHEKIRKTKYEYRLRNELAIRAGLAKRKS |
| Ga0334986_0002018_8618_8830 | F091924 | GGA | MTEEIWSPKWIKQNPELANKAITELQTKVQELESKLKHATTKSANLEKQNKEFKLTIKDMDRRIMRGLKD |
| Ga0334986_0002018_8827_9036 | F017452 | AGGAG | MIHTDEDDEFSRIEHENAIKTGQPYHFDIFVSPSQRNQVLEEVALEIDKMLNGGDTSASFAAFVRGMKT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |