Scaffold Ga0334986_0001595

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0001595
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19222
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (57.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0001595_10218_10388	F012113	N/A	MEQILSFVQSQDVFAWVGALVALLSAVIAIASLIPGDEPENTLQKVVDFLSKFSRK
Ga0334986_0001595_14472_15134	F093506	GGA	MATTIISNISSFDYEPDITTDNGRDGITAFQFSVVGSFSALNSNFSLDQVLVGVPDQPPGNFRVVRRNMSHIAGDTTDGLYRLQVSAEGGTGDNSLFILETSYQYQKEIVSGFVQTIQQDISVNYICEWLSPTVTITTNSQTEDVTAVQDRVRGLVASQQVQIIRNKPDRSAVIGTVQYPVFGPGIDVNAINIVGSSVETAGGLFRVRASATKGQMQLSL
Ga0334986_0001595_3053_3436	F010463	N/A	MVLAATIHRIKLCEDKLREFEQIVSTLTSTMAQNRAELASKGLEKFVIGVTTPLDIPKELIPTRGKDGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNARSRNFAVRKAKGGSR
Ga0334986_0001595_6500_6739	F005702	N/A	LAEAEDTLVIFGLLVFIGLVILQGVRLFAKHIDQQNYERRRFYLSVAADLDRLDKMIAEGNQPKQPELVLPTKNWVGRN
Ga0334986_0001595_6712_7281	F005846	N/A	MTSFPLPARPQASAIPASHIEFKKDTAIEGKANGWRGLFHQKTGIGYNRHGKIASNHNLMVERLSNAGIKAPYIDCEIMGQRTKTGKGTIIVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKATDDGKYPFITNPNYCSPAWQKQRIRW
Ga0334986_0001595_8972_9334	F011284	AGCAG	MTSEQGVEKATQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEENEGTKLWEMPTARLVEEAIAEATDQMVYLLSLRQQMHIVMELARDGCTDETLTNPRARECCHLIYTTLTGQSKPQI