Scaffold Ga0334986_0001485

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0001485
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20010
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (31.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F036674	Metagenome	169	Y
F064515	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0001485_14428_14745	F036674	N/A	MAVRDFDPTQLSTDFDAILSQAGITFSFLGASVTGVWSSSRDAFADFENQRRDESKFTVFLTTSQVATTPAQSQTLVRAGVTYFVEQVRFDAEGTGVEMDVCKVI
Ga0334986_0001485_15617_16048	F014606	N/A	MSTRTDIRNAIGTALTTAGVVVTANLIRGRNNTIASVSFPSAAVYAINEQIEVRTMPIGRGEQFRQLQVMVDYFTAQTSATIIDDLFDTGSAAVEAAILADPTLGGACRDTHLTSVDYVIEPDENKRWGVARHTFNCIYLTTE
Ga0334986_0001485_59_544	F064515	N/A	MPKAEPELTAICEALQIDVRTLRNWRKRDGFPHGKGADEVKLWADRNGLGRLKDSTLSDLKAELMREQIRLARAKNEREAGDVIDRDVVEAMLVTLGQKLDLLLRLKLEVELGPRVAGKSAAEANVEGGEILAEIREVINSNVAKFEGEALAKSRAAEVET