Scaffold Ga0334986_0001145

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0001145
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23055
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (26.42%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Associated Families: 17

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F020341	Metagenome	224	Y
F020342	Metagenome / Metatranscriptome	224	Y
F021097	Metagenome	220	Y
F025487	Metagenome	201	Y
F040073	Metagenome	162	Y
F044444	Metagenome / Metatranscriptome	154	Y
F056537	Metagenome	137	Y
F058089	Metagenome	135	Y
F059883	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0001145_12520_12840	F025487	GGGGG	MTHDSIDLDLVDKTIALIPKQAWTQVRQAIVTALVDNMPGSVIQHLTGSYDDFDRAEEILYDYYELPALSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQQ
Ga0334986_0001145_1373_2317	F002333	N/A	MTTQLQQQELNAAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQTYPRELIKLAFTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYTHALGHLTSHAKLQAHWADKFIHVSDIAKITAILQSDQTDIGHLVAPDGMRLTDRPIDMDSELDDGTKQDSMFAEPTCSCGSFQRQLSNLSSFQEEIEGFRPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDSVSDGRFVLLYTNQGAQAPLSHWRNYKPNEVFTQHHAWDLFFNMMDASYVPFPGIALPQLKAAIKK
Ga0334986_0001145_15613_15873	F001807	N/A	MTVLAIENIVFGDHNATVTAVVEDMRLLYRATRFEPEEWAPALCQATIELDPEEPIPLDEDGFCSYLDQLDPHWQLVDTSDYALDS
Ga0334986_0001145_15873_16058	F020342	N/A	MSAYVNYLNMFDRINLAACAKRRATDNLLDSTRWEGEYDTARLWMKYRLIKTTTHSYIDE
Ga0334986_0001145_16119_16313	F001120	N/A	MKKSHVSFDKTIAGFNVTERGVRSYSKSIKLGPLQVTLNARESGVRGTISIPGTGLSIPSIKLF
Ga0334986_0001145_16316_16492	F001165	N/A	MDMQRLQAMQLVAKMKESAERHGIGFIGGFISPNGEKFVMTNMTDDDDINALMPEDLK
Ga0334986_0001145_17448_17687	F019817	N/A	MTTATPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPAQSSRLEQYLQALVRLEEYGLIRVDRSSDNYTAWIMLAPKNA
Ga0334986_0001145_18867_19091	F059883	N/A	MGALMDQTEDNKRYHLIINVDEKYAIVNALAFYHAHHTLGALMDEDEREQYMLAFQEDGPTLVDSLATRVANTF
Ga0334986_0001145_20866_21069	F021097	AGG	MQRNYFSDACVAIVCGTGLGLLLSVGAQKVLNRHYKATCHNQPGHNLIYTKSFLGDTYYCIDAKYMN
Ga0334986_0001145_21072_21260	F015587	N/A	MTALNIRKNIAAALFNTAAAIDNAKLPTKEDIGTKVNEYRLRAAALMMPNDMAFVITPKQGN
Ga0334986_0001145_2794_3012	F040073	N/A	MLKFEMSPEDMFWQEKMIRSINDCNSMSELKEMATLLTKIATQRQIAIKGLVADAMELMQENYSHKLPAVKD
Ga0334986_0001145_369_791	F002738	N/A	MIMSIDTYGLSSEQYTEFFHKNIRAAAKLYLDTCNILSSEGVGNVDFKTVSEMYQEAVYTTNDDCRRYQKSNNPDALKENDVYGIVPSHQEIIDMIETLVTYTEALDNKLQALTDYVSNLVTITTAGLEGIATTLDDTVD
Ga0334986_0001145_4171_4425	F058089	N/A	MSTQPEDQFTLLYEDGKRKVLHEFQCIGTDEIVDEFINFMRGVGHLELNIIERMHEISKQYLELYNSNKEMFLELQQEELNVIE
Ga0334986_0001145_7302_7535	F002985	N/A	MAYVIACTRWGVPHAITANSKTNRFELIPLDSDVALNKIFSHPYRAGAQQILTWINNNDEDLASKELQVSDEAQFRK
Ga0334986_0001145_8814_9113	F020341	AGG	MRGFSSTQQSTKSASYWVASYTKDNEDEPLGIHKKVLSYKPGQDKELLMIRYCNSIMKINQNIWEILVHQGPGDTPDSGDQIVLRLSRGKFNGSIQIKN
Ga0334986_0001145_9134_9349	F056537	GAG	MVNDIIYINHHILSVSIDTKAMTLTYRGCKYNQEDQARKDKAWWNLAHRPWLCLTYRNICYFPYVTGGQIK
Ga0334986_0001145_956_1186	F044444	N/A	MNEAIIEVSDDILEYARQLATETLMTKPTRYDLDLPEDTHWELVKLAADLKMHHEDYAINVLIGHVESELDRKATD