NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0001132

Scaffold Ga0334986_0001132


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0001132 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23235
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (85.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055468Metagenome138N
F065717Metagenome / Metatranscriptome127N
F073466Metagenome / Metatranscriptome120N
F078642Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0001132_14594_14914F065717GGAGGMSLHRQRTHPEFVEGCFGCKAATLELHPGDAAHMREVPRKKWDAELNAYADARRQGIQPAGTSMKAIKDAHKASENLGRAYNGEKMPPAHRLANKSVTKAMNKLGM
Ga0334986_0001132_15934_16212F073466AGAAGMPYGFAGSTLVDELNRLANGGATYPARDTYQDAQGAANKWAGTTGLGLNGALNKKASASRSAANYKGLNAVCNELAGTTGLSAIPALREVAS
Ga0334986_0001132_22152_22376F055468GAGGMILENAAMAATALAGIVILISAVAWVFKNWLKNYLQELKPNGGSSMADSVKRIEHRIDFLTEEMIKHLKEHNGN
Ga0334986_0001132_489_671F078642AGGAMKSFSGGKKPANQGSAGKAYEQPVRKSGVPKAAKPGMSTIMFGKQPSGTRGSSAPKRAGK

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