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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0001108 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23509 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (71.74%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029722 | Metagenome / Metatranscriptome | 187 | Y |
| F033407 | Metagenome / Metatranscriptome | 177 | N |
| F034912 | Metagenome / Metatranscriptome | 173 | N |
| F077243 | Metagenome / Metatranscriptome | 117 | N |
| F079987 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0001108_15170_15385 | F077243 | AGCAG | MEIVNRGDAMNLNEVAAMSAAQDIIEQAQSTSALEQRALAIVDLSVELHRKAIDLRLQAEEILKEIRYGLK |
| Ga0334986_0001108_4883_5149 | F034912 | N/A | MKHNLPIVKVVWEDACHDTLGWGDSPEKAKDFQVPLVVSIGFLLAETKQGVKICQSLTDDAIAQSLVIPRKMIQSIERGAWSEKKGRR |
| Ga0334986_0001108_6928_7176 | F029722 | AGGAG | MASWINLIKQVKSSDVEEITAAYNQALPFVVQDWAKMILKLAKSKRLPIIEKIDRIHGDKIGQMVRDEVTSQHKDLRKPAKR |
| Ga0334986_0001108_9008_9361 | F033407 | N/A | MNLNTFEEGLLDSIQTERCKKLLWSVIQLAVDDACKAPYKTRPTDDTITALRFLFGDLHESGLDNYLMWLDVDSKEFKRRMVNAMFSERHDKFTDFERRAFRANYNWYLRNEINPND |
| Ga0334986_0001108_9371_9721 | F079987 | GAG | MQEIVKRTIQQAIKLLDASGVKYKIIDQDGNEFGTLTTSSPKKTNKNYVHPPGTMFRYYHPLIEDMKIGDVVAIESGEFTTKSLQGAITSWATATWGKGSYTTCVVGSSVQILRCL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |