Scaffold Ga0334986_0000739

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0000739
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28755
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (28.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F003687	Metagenome / Metatranscriptome	473	Y
F019817	Metagenome	227	Y
F020341	Metagenome	224	Y
F022401	Metagenome	214	Y
F025487	Metagenome	201	Y
F035274	Metagenome	172	Y
F043890	Metagenome / Metatranscriptome	155	Y
F067537	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000739_10672_10971	F067537	N/A	MTTKRQFDYMIGDRVAERPKPHGIYTNNQQTRERISQYRSQRYGEVVGINYKNNSRGATQKFLLVRWDHLPSPTEHATARICPVSALERLTKEVLVPGE
Ga0334986_0000739_1231_1470	F003687	GGAG	MTPKAVEQLLTQDARLLARRDSPVIDAEIEEQRQAALDLFFQWQDGLAQFQDLVPFCVVLQRKVDLNRDLLRWERRHED
Ga0334986_0000739_12693_12989	F020341	AGTAG	MKGFSSTKERTRSSSYWVAVYAKDNDDEPIDIHKKILTYKPGQDKESLMTNYCNSIMKINRNIWEILVHQGPSEVPDSGDQIVIRLSREPFKGCSQLQ
Ga0334986_0000739_1543_1818	F035274	N/A	MALLVGKEELDSALAVFKINHYHLEFDDNVVYLHWVATTSQAREYIDAFLECLDVLIDERWVDTYGSHEQGNPVQLPDEDYICCRYILETV
Ga0334986_0000739_18822_19757	F002333	N/A	MQTQVELNAAQAAIYTRTNLSRAFQDFDDTDIGGIYLRGDDCLVVRRDGSEQAYNRELIKTSFNNYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLSSHAKLQAHWVDKFIHVSDTNKVLHLLQSDQTDIGHLVAPDGLRLPNRPIDIDGDMEADDSEPVMGEPWCSCGSYQRQLSNVSDFASEIQGFKPWCIHLTWFNKYRELLCKRTEARNASPSGTPEKCVSWWYAPPADHISDGRFVLLYTNSGAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMDASYVPFPGTALPQLKSAIKKQ
Ga0334986_0000739_19986_20201	F043890	N/A	MQKMSSWALLNPNSINKLHIECIDEDDGSMTIHITWDENDPDLQWWTDLGPEGQETFMINALREACDCYVD
Ga0334986_0000739_20164_20577	F002738	N/A	MHSEKLVIAMSIDTYGLSSEQYEEFFENNIRFAAQLYLKTCNIISAEGAGSVDFKTVLDMYQETVYATNDDCRRYQKSNNPEALKDTDLLGIYPSREELLAEIQSVNAKVEALADYLAELVKVTTKGLNGIAENLVD
Ga0334986_0000739_20759_21478	F001018	N/A	MTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCAHLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVCKKELTVEVTTDPEFWHTQERADYCIEEEVTTTKQVVVRSMSGEVLSTRTEPKTVTKILPNLDAIRSAYQEGRQLPTGVKVVQEYSVRSKRIFNEPRMELVSSEYPDELLREDPSTDES
Ga0334986_0000739_22784_23134	F022401	N/A	MEHPHEPVDAIKGWQDWYKKHRIVAQMNEPLVTKDSRENMHNTTDAVDSAAKAMWMRKAQEHFADTLAEFQYELSGKDLYKAFYKAAYENAEIGRKEYEKSKELIDMLRYSNIAQD
Ga0334986_0000739_3881_4123	F019817	N/A	MQATATPALSINQRNLYQYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIHVDRSSANYTAWIMLAPKEQ
Ga0334986_0000739_9698_10018	F025487	GGGGG	MTHDTIDFDLVDKTIALIPEQAWTQVRQAIVTALVDNMPGPALEKLTGTYDGFDRAEEILYDYYQLPDLKQDLIVDAFKIMGAINCLELLSSLNLTEDELQTMQQQ