NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0000715

Scaffold Ga0334986_0000715


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0000715 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29171
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051128Metagenome / Metatranscriptome144N
F080024Metagenome / Metatranscriptome115N
F097217Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0000715_15661_15906F080024AGGAMSVVATLLKNKAPQAAWLVTVKDLATGESRHAAHTSLGAAKKTAVAFTNSLLDLSRTRLPWVEDEAQKADGIQYFRAEVDG
Ga0334986_0000715_23957_24445F051128N/AMAHTPDLPKSEQEFLATLVKDQLWSRVQDLHDAGWTLQSIADAFTPAKRRSTIRSWVVKEITRHEFITATPTPPVKKPRYVRQRPKSPGIPQDEQLRIARLSPLARRYRSRTTASSASFTANNELTVIAGELYLKGVTVSELARASGVTYRAMKRRVDKALQ
Ga0334986_0000715_2916_3248F097217GGAMSSTAVRTEVTEITVTTTVAHLDEAVDALIQEFAQAKKDMKVLEAKKKAAEDKIRQLMGDAKIGFINGVQRVEIKDRTTTKIDRELLQEAYPDAYTATLKSTDYTIVDAK
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