Scaffold Ga0334986_0000690

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0000690
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29526
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003785	Metagenome / Metatranscriptome	468	Y
F006062	Metagenome	382	Y
F015721	Metagenome	252	N
F030066	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000690_12029_12220	F003785	GGAG	MTTVQELEVTVTSHIDVCTVRYEAIHARLKRLESLLIKIGGAIILVLLGALGSMAIMLLDAAK
Ga0334986_0000690_5212_5541	F030066	AGG	MGDEYTYSPTVKQEKPKPSHNLEHSLHSNLATWNELVRQSPLNRLRFYDAQLARGIEVNRERVAELVREAGPAAVLSDRDVIGLIRQLWGEKAVEKLKRANSPAKQVQG
Ga0334986_0000690_8138_8494	F015721	N/A	MAKDFADRKEFADKGDVYASGKRIEVKHIKHDFQYEAWPFETAAICAKKSFDAADPRPDYYYIVNASLTVAALVDVRTTFPDWLVRKITDKERGYDYDVYAVAPEYLAWRYIDFEERL
Ga0334986_0000690_9156_9560	F006062	GGA	MKRIFPANTPPEQIAHAVLRMVSGLPNKPLAVTVELWKKPRTNQQNAYLWGVVYPAIMEGGGEALGGFTRDDVHEWLLGECFGWQTLEGFGRKRMRPLKRSSVLNKQEFSDYLTFIDTKCAEFGIAIPEPYEPA