NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0000656

Scaffold Ga0334986_0000656


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0000656 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30420
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (8.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041778Metagenome159Y
F073552Metagenome120Y
F090397Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0000656_12712_13026F041778N/AMYIYKLNYKDKETAIKDFINKNVYIEFEDLNKLKYLNYGDGIKAVVEIGKVVKTPGVYDAEFKEITAPEYYDGYAFDVMSEIEIKFDNEIFPKKIIHNFAGFEL
Ga0334986_0000656_18348_18656F073552N/AMWIFNLTAPYQFKCIPRNYNGGELTFFLRDEIRDTTTEIEILGAFYQNSVLILNFEEPILREGQSFEITINENNVLIYRGKAFATAQTDLENFELNKGVLKV
Ga0334986_0000656_519_947F090397GAGLIIHELAKKDAQWRKMALQICKSKDVADELVQNMYIKLSDRTIPVSDGYIFVTLRSLFYDSLKNTDILIDDFSKFEVEDEEYNEGIDYDELSKDLTWYERTLFEQSTLIGQRELSRQTGIHIQTIHRVNKMVKLKLNGKKKD

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