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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0000417 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37337 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (88.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018127 | Metagenome / Metatranscriptome | 236 | Y |
| F029017 | Metagenome / Metatranscriptome | 189 | Y |
| F031754 | Metagenome / Metatranscriptome | 181 | Y |
| F039471 | Metagenome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0000417_16218_16610 | F039471 | GGAGG | MDEFYLLVVARRKQRKRTKAPNGRWLKQKPKDRTRITRVAKCTFRYDCFSDDGFTVGRWWKIEVFDNPITHMMDLIFVGMHFDPGVRAAEALSERMVSGLSLASGVKWEADCEIIERGQAIKKRIDLEVA |
| Ga0334986_0000417_31854_32231 | F018127 | GGAG | MAKQKDNWIPWLIIGGLVLYAMNQQPREGGDPSKPAGVTAVVRSTIPSIRAAYKQAFLDAAAKIETGEIANQEQWTKFIEENAGAKRIEAMNKVYTAIDELKLPVTFAGREAEIAKINREISRAW |
| Ga0334986_0000417_32231_32473 | F029017 | GAGG | MTEIGLITWYIVQLVLWAGPFGVAAFLAVCFLAGYFLGLKLSRLKRPKPMGNVKMDHIKYDILPDGTLSPGDNRGLEDSE |
| Ga0334986_0000417_33448_33873 | F031754 | AGG | MNEKGGPVIMVVLLLGLFWLCSEPAKDPTQCDLMDTTPLIEEVATVKESFTVQPVDPQPSPSDRPHEKTKREILIFVSANCPPCEKWKRCEMQRFMDAGWAVGIVEVHSYGLTPTFEVESGDKKATIKGYTTLEQAAEAVR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |