NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0000277

Scaffold Ga0334986_0000277


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0000277 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44121
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (82.98%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002130Metagenome / Metatranscriptome591Y
F007521Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0000277_20957_21571F002130N/AMTEKLNANTTLDKILGYVDSPFKLFAVILMAVIAFVGYALYESQDFIREAYKESQKLPEIRTERADDAATMLFKQTGATVVAVFKVNPLFNSRTLYRAYTKDGRDKTIEDIDVGLFTHNSSNNADVVKLMTNEIPCGEYRYAQSEVGLWYLEKGVTYTCRVSVPPDSHRFVGQVTVGWAAQPANLDQTKFMLEIASAMLTKRGG
Ga0334986_0000277_32189_32413F007521AGGAGMAGKGMGCATRGGGAVMSGAKNHVTSEPSKKSGPVMMKKGGAVNQHKRMAMGKPVGKMGGGMMTKGYKKGGAVC
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