NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0000213

Scaffold Ga0334986_0000213


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0000213 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50777
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (79.66%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002130Metagenome / Metatranscriptome591Y
F020345Metagenome / Metatranscriptome224Y
F021067Metagenome / Metatranscriptome220Y
F038156Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0000213_1450_1647F020345GAGGMATNALSLVLKEIEEKRESVALSLVDGSAKDFAEYKSMTGEIRGLSLAHSYITDLVRKMEREDNE
Ga0334986_0000213_22855_23079F038156AGGGGGMKRDLYDFTIPPDTPKEAHTTMYYFPHEYKSSVGLQSRSPALNKLPCMAAHYDLGGNLLFTRFIFKDGTWRDEK
Ga0334986_0000213_44275_44889F002130N/AMTEKLNANTTLDKVLGYVDSPFKLFAVILMAVIAFAGYALYESQDFIRDAYKESKKLPEINTARVEDTSAMLFKQTGATVVAIFKVNPLFNSRTLYRAYTKEGRDKSIEDIDVGLFTQNASNNADVVKLMTNEIPCGEYRYAQSEVGLWYIQNGVAFTCRVSVPPDFNRFVGQVTVGWTEPPKNLEQTKFMLEIASAMLTKRGG
Ga0334986_0000213_50495_50758F021067N/AMALKISIQNSNVGVPFTEAYARITNIFGNKDQVQYQISVSANADARQANAQEVASHAFYCATPQGNLMDGLYADLKLQAGFENAEDC
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