Scaffold Ga0334986

Basic Information
Taxon OID	3300034012 Open in IMG/M
Scaffold ID	Ga0334986_0000200 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034012 Open in IMG/M

Scaffold ID

Ga0334986_0000200 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	51968
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (88.41%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

51968

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (88.41%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F001715	Metagenome / Metatranscriptome	647	Y
F002405	Metagenome	562	Y
F018367	Metagenome / Metatranscriptome	235	Y
F031458	Metagenome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000200_22942_23112	F018367	GAGG	VIDVASAQIPWPNTEQKIVLVCRVVLPNEKYGANEFLDKDGRVCRWVLEAKNDRPN
Ga0334986_0000200_23566_24183	F000220	AGG	VSEGTLNANSTLDKVLGYVDSPFKLAAILVMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLLKTTNATIVAVFKVNPMFGTRILYRAYAKDGRDKTNDGLDVGLFTNNAANNADVVKLMANEIPCGEYRTAQSEMGIWYINKGVTYTCRISVPPEPGRFVGQITVGWETEPENLESARTMLSIAATMLSRSKQ
Ga0334986_0000200_28944_29351	F031458	N/A	MPLHYIPPNQLLTVWDKAAPLLQKSIDIEPDFITIEQVEYAIRTGKMFLLVWDEPDVGITGAAAVEFIDYPRYRVGHGTLLGGKGVVKPHVLQELVAWMKANGATVAQCWCRDELVPMYKKMGMEETHHVMRMKL
Ga0334986_0000200_39417_39623	F002405	N/A	MTPNQIAEPKWIFPFQGMAVGESFFIPTLRFAEMIYAIDSGAKRADIRVKCYITSKDKHIGVRAWRVR
Ga0334986_0000200_412_999	F001715	GGAG	MDDIEIVPPIEENIPLPESAKEAFPELTVTQELEMRANVVKLMSDLTGQPISPTQDNANEAKEIAKRMITDPASRPDFASYPNETLAYLAGMVAQMNVSIVSELSELKMYVVNKLVAEIEASKDPKVRVAALGKLGEIDGVDAFKKRTETTIKIQSLEEVEKELLETLSSIEDKVIDVEAREVVRNNAPNSETNA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334986_0000200

Overview

Ecosystem & Geography

Associated Families

Sequences