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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0000188 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 54166 |
| Total Scaffold Genes | 78 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (48.72%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004130 | Metagenome / Metatranscriptome | 451 | Y |
| F009805 | Metagenome / Metatranscriptome | 312 | Y |
| F020160 | Metagenome | 225 | Y |
| F029735 | Metagenome | 187 | Y |
| F095396 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0000188_22188_22529 | F004130 | N/A | MHSAASFLDAFVQDEVKCRCLDEEDFGAPLDNKQNDVPLYDSYNRGLVACEQGLERNPLNLEGARPGMTGYIPSMEEGLAMGASPKPKTLVLELEEPDEEEQMLSAKRRGLIR |
| Ga0334986_0000188_4025_4207 | F020160 | N/A | VPYNPNGKMECRKRLAWTIACERAVVTKEDAVDLYNKMMKEFESIDKRTQYKERESNKTQ |
| Ga0334986_0000188_4284_4469 | F009805 | AGG | MDINIGTGEWMNSLMSRMTSAMDGDCFYLPTLMHLHAYNILKEDFFPERTFKVEIKNSVD |
| Ga0334986_0000188_49336_49893 | F029735 | N/A | MAKDHRLALDRYIDYTKDPFLKKRQVNFDDSFASKPSSGAAPWMPSRFEQSDLLRRIQTRKLRLNPGLNFVGKTPEEYEVFADIGRFVRNESYDFNEGRALTALRPEDQPGFSPVWVEAYRISPTVNPDKRASNPMPRMTNPDPKGYMMASAEKRALNEVEDNKSVAQLLNKPSEEDNKEEPEKA |
| Ga0334986_0000188_53698_53904 | F095396 | AGG | MNPKNRAERVVALDAITQEAEKLAAGGADPLTVKSFTVGARKELADQRPDVENYFDAAVAAKKAKNSF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |