Scaffold Ga0334986

Basic Information
Taxon OID	3300034012 Open in IMG/M
Scaffold ID	Ga0334986_0000179 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034012 Open in IMG/M

Scaffold ID

Ga0334986_0000179 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54920
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (75.32%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

54920

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (75.32%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000952	Metagenome / Metatranscriptome	822	Y
F001739	Metagenome	643	Y
F002597	Metagenome / Metatranscriptome	544	Y
F017833	Metagenome / Metatranscriptome	238	Y
F037222	Metagenome	168	Y
F039983	Metagenome	162	Y
F083753	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000179_19388_19657	F039983	AGGA	LLTIYLKINIREVKMDSHLSEEMVKQVFFRSNEKRPDPLIADEVDIVQFAEKLELTLRPLIAAEEHKRCVTIVAHMNREVASALQNQHP
Ga0334986_0000179_25066_25278	F037222	GAGG	MDTTTPPPTSKEHLDWLETLTQTYAEMALAGGDQALKDGRRDYLIARFKALEQDFPGITAMIHTKIRAMK
Ga0334986_0000179_27913_28098	F083753	AGGAG	MKHAEAKYVDLGLRYELARTPAAGTAIAQAIRSLLEAETIEDRTEARRLVDRGRQEAREV
Ga0334986_0000179_42677_42823	F000952	AGGAG	MATSDQEQKSVQVPQHKRMAMGEKLDGQSMKGATPTKQAGGLSQAKKK
Ga0334986_0000179_42820_43002	F017833	N/A	MKTLSDLIGGIKAKQAEIASSLVAGNATNWESYTRLVGHNAGLQEALDILNNLMKEDENE
Ga0334986_0000179_488_802	F001739	N/A	MTTFTTTITAMYTLQQPDPNYVVNAIWQVTGVDGSNTASIGGNTQFDSQQATPFIPYDQLTEAVVIGWIPESAITSAQACVQGQIDSMITPPVSPANTPLPWAV
Ga0334986_0000179_7884_8144	F002597	GAG	MALNPAQIYDPRYHTFESWACLMCELYGAQNLQIPNAQTDWKLWGNGLNAIDVFSNEATPRTDQYENWFDWAEAMVSAVNPATQTT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334986_0000179

Overview

Ecosystem & Geography

Associated Families

Sequences