Scaffold Ga0334986_0000095

Overview

Basic Information

• Taxon OID: 3300034012
• Scaffold ID: Ga0334986_0000095
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68541
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (37.39%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F021068	Metagenome / Metatranscriptome	220	Y
F022611	Metagenome / Metatranscriptome	213	Y
F034858	Metagenome	173	Y
F036146	Metagenome / Metatranscriptome	170	Y
F057999	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0000095_22099_22263	F036146	GGA	MNVCRTFLITTADGQRIALGAISPKQAEHFLAVLRPDLKVALVEEIKPLPEPEP
Ga0334986_0000095_26192_26470	F005382	N/A	MDKTSFIRQFIYRAGPSIVGVEFVKQDGSVRTLRFNPRDSKEIKGTGKPSTKPSIIRCRDFSIARNEGQGAWRSFDCERVTKITANGQTVCF
Ga0334986_0000095_28990_29292	F057999	N/A	MTALALVFTLDSFRPTQGQWWRHDTSRNIERRVKLVAAHLGFWLWTADFRDAHSGRILSQRFFCTKPSSEEPVALFENPDDRQRWMEMQWKAQEEANGNR
Ga0334986_0000095_34407_34598	F022611	N/A	MWGLPERQPFNIGPYKLWPCFSRPEFQWFAAVDGKPLYFRTSNEAKLFFNDLLAVDDPEGLCD
Ga0334986_0000095_45789_46466	F034858	N/A	MRFCISTCRKFATHTLQVIVPSLLKNGITKERILIVNGGWEDSLTIADYEGVPMLLTPQNSFEYTPLIEIVDNNIHSDYWFLLHDTCIAGPLFYELALSLPVDSPEKVALKGTPSMSIGLYRMDYLLRHKDRLMAIRNTDCSPEALQRWKQWGVPNEDYMLWKLNDAPTHVYHPDRHGPDEWNYQGHSDAYGTGFARRIEYFPQLDLYKAKSNWQGVQPVLCLDI
Ga0334986_0000095_48476_49192	F021068	GAGG	MKPSDCTIYAVCIQNEKVRYEAQSRIVPILGGAWNTVDAERRALREQGYVFDDEGAFLSSLNRRWGELSCVHWMLLNAEEANIGNAQYRRNWIEPKSGWYAEDVLYVPEPAVFSCTLEQQFYGGHSAFDAPAITRELADTGAWAFTREEIDKLWAQNLFIGCNMARGPKQYYKQFMTTLFVCLLPIWEKHKEHFLSIEDYDKRALAFIAERLLTGLVLYRDKFFPGITIETAPIGFIH