Scaffold Ga0334944_059785

Overview

Basic Information

• Taxon OID: 3300034009
• Scaffold ID: Ga0334944_059785
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 723
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F017066	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334944_059785_3_353	F002483	N/A	VFADGPLAERRPELKVRRARRRPNRLGFAVPSQFRLSVTAYPGIRPGDVLETLLHELVHLHVGRAAEAHAWHGPTFKRTLAQAMREAYGVSIPVPRSTLHGPYAEAIEQALVAATL
Ga0334944_059785_350_490	F017066	GGCGG	MILPLAHHSALVALPVFAPALVIIAFLLVHRRREKRRWEAEESATD