Scaffold Ga0334944_024063

Overview

Basic Information

• Taxon OID: 3300034009
• Scaffold ID: Ga0334944_024063
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1159
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334944_024063_238_480	F091480	GAGG	MRDLHIYVEPAGSGARGERAAFYSRRADGPYYRWLYAEVPGRWHYSRVSLDRLTLRMLCVAPWDALPAALRSRLGEHYLE
Ga0334944_024063_512_745	F020517	AGG	MGRQRPVSRDVRHYLVKRPNEIIAKRRSWNEVQAELSEKGASGADEAMLFRGLVTDDGTEYRDMYADSRTQVTEHTA
Ga0334944_024063_963_1124	F081092	AGGCGG	VTGYDDFIERLEAALADEEGREDFLDYLQGLTGEGRAEILAGADRLEAEAEVA