NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334942_067487

Scaffold Ga0334942_067487


Overview

Basic Information
Taxon OID3300034008 Open in IMG/M
Scaffold IDGa0334942_067487 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 38SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007252Metagenome / Metatranscriptome354Y
F062389Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0334942_067487_3_197F062389N/ALAENSISNKNNKASHEFIEKSSLLLESYQKAVPKLLGKAESSLEEAIDLINLIVSASEAEGDNG
Ga0334942_067487_541_867F007252AGTAGMNNKVQLFFEDVTLWDFNMKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPSAPPVITSGHLSESLSGEELKEFLAKKKARKL

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