Scaffold Ga0334942_009117

Overview

Basic Information

• Taxon OID: 3300034008
• Scaffold ID: Ga0334942_009117
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 38SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2568
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334942_009117_1188_1349	F081092	AGG	VSGYDDFVERLEAALAGDEAREDFLEYLEGLSREERADILAEADRLEEKTEAA
Ga0334942_009117_1550_1780	F079676	GAG	MGSETPEPAAGIKAGDRVRAVEGAYKGVVGTALRVVTSKDEGRTSRSVLVSFPAGGADYLDAAALEMAEEGGASVD
Ga0334942_009117_458_700	F091480	N/A	MRDLHVYVEPAGPVERVERKAFYSRRGDGPFYRWLYAEGSGRWRYSRVSLDRPTLRVLSVAPWDALPDALRSRLGEHYLD
Ga0334942_009117_722_970	F020517	N/A	VKGVKEVSGSKPVSRDARHYLVKRPNEIIAKRRSWNEVQAELREKGSDADEAMLFRGVVTADGTEYRDMYADSRTQVTEHTA