Scaffold Ga0334942_001513

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334942_001513

Scaffold Ga0334942_001513

Overview

Basic Information
Taxon OID	3300034008 Open in IMG/M
Scaffold ID	Ga0334942_001513 Open in IMG/M
Source Dataset Name	Biocrust microbial communities from Mojave Desert, California, United States - 38SMC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8508
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.3778	Long. (^o)	-117.6098	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006775	Metagenome	365	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334942_001513_6154_6360	F006775	AGGAGG	MQLGKDSCACGHAIDNHDGGRGGPCNTCACAAGEPPTAFQVGVIHAMHELTVTMVRLVKEIQSRGEKP

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