Scaffold Ga0334942_000735

Overview

Basic Information

• Taxon OID: 3300034008
• Scaffold ID: Ga0334942_000735
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 38SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13566
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004903	Metagenome / Metatranscriptome	419	Y
F006090	Metagenome	382	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334942_000735_2674_2892	F004903	AGGA	MGRYLQKISLRPYSDSEIWTGWELEGRSGEVEGLVLADDIPDHELVARYGVTDFQKIPGEYLDSGDFRPKSR
Ga0334942_000735_4441_5073	F006090	GGA	MSLLMQEKVSTPAPKLEGKEVLVGPDPAIARVKGVMFGGRRQFLLDTLGPEGFTAFLEKLTPRTKSYTRTPLASSWCEFESLIELDRAIYNELKAKHPNVLALIGAASAELGIGRIYRSLDSEELVQFLENNAQFHDQYQKFGTVRFEKTPGGGRMIYANYPVHSPVYCASAVGFFMESILRHGGTDPKVAETKCQCHGEKTCTFEMTWR