Scaffold Ga0334936_053120

Overview

Basic Information

• Taxon OID: 3300034007
• Scaffold ID: Ga0334936_053120
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 32SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 838
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020164	Metagenome	225	Y
F104575	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334936_053120_176_448	F020164	GGAGG	MAGYLPKEWSGKRVAVRFTRGRGFDARLVGDNAGGLTVEPIEEDAEEERARSAFVPWAAVRYIQLLEAPSEGQRARPKGTAAKKSEEPAP
Ga0334936_053120_554_781	F104575	GGA	MIAIPQLDGTVRRFPQSAGMDAFTNLIDRMGAGAEAPPEHPLIAAARNSSEPKWSESFYATGGEGWTDQVENLSE