Scaffold Ga0334936_012833

Overview

Basic Information

• Taxon OID: 3300034007
• Scaffold ID: Ga0334936_012833
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 32SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1844
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334936_012833_1166_1333	F081092	AGG	VSGYDDFIERLEAALAGGEAREDFLDYLGGLTSEGRADILAGADRREAEEEAEVA
Ga0334936_012833_1551_1781	F020517	AGG	LSGQKPVSRDARHYLVKRPNEIIAKRRSWNEVQAELREKDSDADEAMLFRGVVTEDGTEYRDMYADSRTQVTEHTA
Ga0334936_012833_737_967	F079676	GGAG	MSNEISEPSAGIKAGDRVRAVEGAYKGVVGTALRVVTSRDEGRTSRSVLVSFPAGGADYLDAAALVKTEEGEATGD