Scaffold Ga0334936_004484

Overview

Basic Information

• Taxon OID: 3300034007
• Scaffold ID: Ga0334936_004484
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 32SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3644
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F005142	Metagenome	410	Y
F053801	Metagenome	140	Y
F055429	Metagenome	138	Y
F104575	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334936_004484_1563_1808	F053801	GAG	MASKAARSKPNRELPSIKALLEDLTDRVLAGELATGPAAVANQLVNTRLRAIEQERKTRELEEMAERLEALEEVLKGRKRA
Ga0334936_004484_2563_2829	F005142	GGA	MTEILEAMTRPDSNGTPALPKRAGPKGLLPSTWLERTLKLEYVDCRGAGQETSGTLLDLYPAGPVLNMGGAKTLISWDRLVLCELIED
Ga0334936_004484_2826_3104	F055429	GAGG	MSGQLQRLVLDYRGKAGEVVVRCLYRSQDGAGPSTKARAREVTELARAGLRDVLEALEGGTECVGTSGFTTREDVLLVTASPDTDKLVKGDV
Ga0334936_004484_3280_3471	F004425	AGG	VLLSLLASVRDLYSRLPETYHLEPWELQHVLYSLGYTDDLAAEAEIAAAVEVARGDWPQWSAA
Ga0334936_004484_522_752	F104575	GGA	MIVIPQLDGTVARFPQSAGMDAFINLMDRLGAGEGAPPEHPLIAAARNSSERKWAHSIYAVEDPEAHVAPVEDLSE