Scaffold Ga0334934_004643

Overview

Basic Information

• Taxon OID: 3300034006
• Scaffold ID: Ga0334934_004643
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 30SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1880
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334934_004643_1177_1410	F020517	AGG	VSGKRPVSRDARHYLVKRPNEIIAKRRSWNEVQAELREKGDSGADEAILFRGLVTEDGTEYRDMYADSRTQVTEHTA
Ga0334934_004643_1448_1690	F091480	N/A	MRDLHIYVEPSGQGARVERAAFYSRRADGPFYRWLYAEGPGRWDYSRVSLDRLTLRMLCAAPWDALPAALRSRLGEHYLE
Ga0334934_004643_380_601	F079676	GAG	MLGETAEPGAAIKAGDLVRALDGAYKGRVGTALRVVTSSDEGRTSRSILVSFPAGGADYLDVGALEKAETADE
Ga0334934_004643_798_959	F081092	AGGCGG	VSGYDDFIERLQGALDDDEGREDFLDYLQGLTSEGRAEILAEADRLEAEAEIA