Scaffold Ga0334930_002730

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334930_002730

Scaffold Ga0334930_002730

Overview

Basic Information
Taxon OID	3300034005 Open in IMG/M
Scaffold ID	Ga0334930_002730 Open in IMG/M
Source Dataset Name	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2686
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005661	Metagenome / Metatranscriptome	393	Y
F006886	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334930_002730_1345_1809	F006886	N/A	MYQDFDASEFDYLSTATPQQFEQQNQTQTPSVSNIERFWNLTGNWGEFGSYFGAGLSASLIVRAIPALIPAAVILIPAAGLGLAVYTLTADGSASLRSQLILIAVATALLSANWDAWLAWVIANSQLLLFTAALLIACGCFVVTKIWSKLHNAN
Ga0334930_002730_633_1304	F005661	AGCAG	MMQNFRVAQTPGAAKIKRQFNYESGPLTPEMVNAAGKEAKVLDLQKQLRTAYNRHDAKIRANTVEIERLTLEAQENGLTDTLQIDKYVAKAIAAGAKYDQNIINLQQKLQHELGLIKVEGASTQTLQNADFRQRLLLIKANHQAKGQIQQNGFQQSLKAIQASPQQAIEMQAKRANFNAYINAKDYDPIPAVPSGSAGGNSPITSNNGKGFLGGLFDFFSGKK

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