Scaffold Ga0334930_000527

Overview

Basic Information

• Taxon OID: 3300034005
• Scaffold ID: Ga0334930_000527
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7391
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y
F038520	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334930_000527_4414_4704	F038520	N/A	MKQKGSKHGGSRTGAGRPHKWQGGETKLVRIPVAYVGKILQIVAYMDANEGQLPTDIAFFIEGEDFPPPEYDDSRELPYPNFDRYHKRYRNSTWNS
Ga0334930_000527_7017_7391	F001042	AGGTGG	MTTSHLIGENFASDVPKDFEANTDGKIVIDKLLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAEYSISNRNDTVCREFTEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAEA